Title: D(S)
Browse item: https://iochem-bd.bsc.es:443/browse/handle/100/479860
Program: Orca 6.0.1 - RELEASE
Author: Kiriakidi, Sofia
Formula: C68H57N2O3P2Pd
Calculation type: Single point Minimum
Method: DFT ( r2SCAN )

JOB |

Atomic coordinates [Å]

Atom x y z BASIS SET
TYPE (Primitive) / [Contracted]

MOLECULAR INFO

Multiplicity 2
Charge 0

Bond distances

Atom1 Atom2 Distance
C1 C6 1.398553
C1 C2 1.408119
C1 H95 1.095160
C2 P7 1.864290
C2 C3 1.422372
C3 C14 1.511274
C3 C4 1.406309
C4 H98 1.094966
C4 C5 1.395789
C5 C6 1.396754
C5 H97 1.096175
C6 H96 1.096509
P7 Pd16 2.251258
P7 C41 1.851510
P7 C8 1.857191
C8 C9 1.406577
C8 C13 1.408534
C9 H104 1.097076
C9 C10 1.401730
C10 H105 1.096703
C10 C11 1.397850
C11 H106 1.096443
C11 C12 1.401954
C12 H107 1.096812
C12 C13 1.397141
C13 H108 1.099419
C14 O15 1.234251
C14 N76 1.360460
Pd16 P17 2.275654
P17 C47 1.850736
P17 C18 1.840596
P17 C55 1.843582
C18 C19 1.405605
C18 C23 1.410178
C19 C20 1.401285
C19 H114 1.095776
C20 H115 1.096748
C20 C21 1.398433
C21 H116 1.096510
C21 C22 1.402364
C22 H117 1.096733
C22 C23 1.396606
C23 H118 1.097897
C24 C26 1.502839
C24 C25 1.341998
C24 H100 1.100575
C25 H101 1.101047
C25 H99 1.101852
C26 C27 1.574415
C26 H102 1.107666
C26 H103 1.104108
C27 C28 1.557665
C27 C36 1.513630
C27 C30 1.532407
C28 C40 1.460693
C28 O29 1.230125
C30 C31 1.401532
C30 C35 1.407992
C31 C32 1.402487
C31 H133 1.093537
C32 C33 1.396788
C32 H132 1.096787
C33 C34 1.401481
C33 H131 1.096655
C34 C35 1.396186
C34 H130 1.096488
C35 H129 1.097258
C36 C37 1.374317
C36 H128 1.097590
C37 H127 1.098713
C37 C38 1.418164
C38 C39 1.409992
C38 H126 1.097050
C39 C40 1.385335
C39 H125 1.098529
C40 H124 1.097041
C41 C42 1.406710
C41 C46 1.407487
C42 H109 1.096189
C42 C43 1.400084
C43 C44 1.400003
C43 H110 1.096737
C44 H111 1.096622
C44 C45 1.400592
C45 C46 1.398565
C45 H112 1.096621
C46 H113 1.099375
C47 C52 1.404955
C47 C48 1.412213
C48 C53 1.509044
C48 C49 1.407162
C49 C50 1.397194
C49 H94 1.096762
C50 C51 1.399603
C50 H93 1.096271
C51 C52 1.397874
C51 H92 1.096335
C52 H91 1.096983
C53 N61 1.352211
C53 O54 1.240894
C55 C56 1.407727
C55 C60 1.406178
C56 C57 1.398443
C56 H123 1.098794
C57 C58 1.400849
C57 H122 1.096555
C58 H121 1.096575
C58 C59 1.400104
C59 H120 1.096730
C59 C60 1.400177
C60 H119 1.096438
N61 H89 1.019301
N61 C62 1.454766
C62 C70 1.521137
C62 C63 1.555573
C62 H78 1.102373
C63 H77 1.104997
C63 C64 1.516062
C63 N76 1.460375
C64 C69 1.403085
C64 C65 1.405261
C65 C66 1.398667
C65 H84 1.097681
C66 C67 1.400309
C66 H85 1.096325
C67 H86 1.096596
C67 C68 1.399746
C68 H87 1.096579
C68 C69 1.399660
C69 H88 1.097117
C70 C75 1.405617
C70 C71 1.402712
C71 H83 1.096629
C71 C72 1.400103
C72 H82 1.096843
C72 C73 1.399520
C73 H81 1.096658
C73 C74 1.401026
C74 H80 1.096707
C74 C75 1.398923
C75 H79 1.097788
N76 H90 1.020143

Solvation input

CPCM Dielectric -0.05126126866053Eh

Parameters:

Epsilon 7.5650
Refrac 1.4050
Epsilon function type CPCM

Radii (Å):

C 2.0400
P 2.1600
O 1.8240
Pd 1.9560
N 1.8600
H 1.3200

Total SCF energy

Value Units
Total Energy -3767.23233710242312 Eh
Nuclear Repulsion 14402.05240528361355 Eh
Electronic Energy -18169.23348111737505 Eh
One Electron Energy -33911.29885385238595 Eh
Two Electron Energy 15742.06537273501090 Eh
Potential Energy -7421.15920097379694 Eh
Kinetic Energy 3653.92686387137383 Eh
Virial Ratio 2.03100923402473

IR spectrum / Vibrational frequencies

Selected frequency :

Population analysis

Loewdin

Mulliken atomic charges

Electrostatic moments

Charge

0

Dipole moment SCF

NUC ELEC TOTAL
x -89.705570795 88.882157585 -0.823413211
y 41.059375948 -42.125637286 -1.066261338
z -10.347344884 10.301062166 -0.046282718
μ [Debye] 3.426306601

Frontier orbitals

Spin UP orbitals

All Homo/Lumo range:

Spin DOWN orbitals

All Homo/Lumo range:

Final results

Total Energy -3767.2323371 Eh
Final Single Point Energy -3767.2323371 Eh
CPCM Dielectric -0.05126127 Eh
Nuclear Repulsion 14402.05240528 Eh
Zero point vibrational energy 1.0588499 Eh
<S^2> 0.81 (expected value: 0.75)
Total enthalpy -3766.10386437 Eh
Electronic entropy 0.00065446 Eh
Vibrational entropy 0.11956886 Eh
Rotational entropy 0.01938113 Eh
Translational entropy 0.02229101 Eh
Final entropy 0.16189545 Eh
Final Gibbs free energy -3766.26575983 Eh

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