Title: /AB-DB Cyclic-polypeptides - Enramycin A +2 Cyclic-polypeptides - Enramycin A +2 freq
Browse item: https://iochem-bd.bsc.es:443/browse/handle/100/500288
Program: xtb 6.7.1 (edcfbbe)
Author: Hospital Gasch, Adam: Malloci, Giuliano: Gervasoni, Silvia
Formula: C108H142Cl2N26O31
Calculation type: Geometry optimization Frequency calculation
Method: GFN2-xTB

ATOM INFO

Atomic coordinates [Å]

Atom x y z

Bond distances

Atom1 Atom2 Distance [Å]
Cl1 C161 1.723995
Cl2 C162 1.746600
O3 C72 1.217610
O4 C74 1.211876
O5 C79 1.217366
O6 C83 1.416652
O6 H231 0.962709
O7 C87 1.213302
O8 C92 1.216467
O9 C94 1.217891
O10 C134 1.337771
O10 C116 1.428831
O11 C104 1.408303
O11 H275 0.964266
O12 C103 1.208533
O13 C113 1.350561
O13 H282 0.978944
O14 C110 1.214415
O15 C112 1.227486
O16 C117 1.206266
O17 C118 1.207138
O18 C122 1.216164
O19 C129 1.413622
O19 H296 0.963020
O20 C127 1.220968
O21 C130 1.227052
O22 C132 1.214232
O23 C134 1.196906
O24 C137 1.230057
O25 H305 0.968109
O25 C151 1.354147
O26 C141 1.225528
O27 H306 0.971931
O27 C165 1.354619
O28 C167 1.355972
O28 H307 0.964681
O29 C173 1.368156
O29 H308 0.975086
O30 C174 1.382580
O30 H309 0.965600
O31 C172 1.230491
O32 C176 1.230049
O33 C176 1.266456
N34 C69 1.446568
N34 C74 1.363069
N34 H184 1.008203
N35 C75 1.329010
N35 C67 1.461622
N35 H36 1.005042
N37 C70 1.454682
N37 H187 1.005294
N37 C75 1.325800
N38 H190 1.018688
N38 C79 1.347342
N38 C71 1.439196
N39 C77 1.457637
N39 C72 1.336966
N39 H191 1.010626
N40 H203 1.006181
N40 C75 1.327079
N40 H204 1.005953
N41 H205 1.009066
N41 C94 1.342058
N41 C78 1.439411
N42 H209 1.004310
N42 C86 1.454649
N42 C97 1.330769
N43 C97 1.322959
N43 C80 1.457949
N43 H44 1.015950
N45 H212 1.018739
N45 C93 1.453856
N45 C87 1.348244
N46 C112 1.365973
N46 C81 1.439948
N46 H216 1.006248
N47 C110 1.352886
N47 C84 1.447969
N47 H221 1.017289
N48 C92 1.342945
N48 C102 1.456405
N48 H229 1.010276
N49 H234 1.017171
N49 C95 1.455148
N49 C117 1.349798
N50 C103 1.347148
N50 H245 1.007784
N50 C111 1.450969
N51 C97 1.328079
N51 H247 1.011717
N51 H248 1.006152
N52 C122 1.333447
N52 C53 1.450129
N52 H254 1.011017
C53 C110 1.536393
C53 H54 1.091324
C53 H55 1.094388
N56 C118 1.355428
N56 H256 1.009415
N56 C121 1.456876
N57 C130 1.328851
N57 H259 1.015415
N57 C115 1.452724
C58 H61 1.097834
C58 C137 1.532912
C58 N59 1.449334
C58 C131 1.538235
N59 C132 1.338276
N59 H60 1.019159
N62 C123 1.443359
N62 C127 1.338817
N62 H263 1.021825
N63 C114 1.452430
N63 H265 1.008237
N63 C141 1.360669
N64 H266 1.008732
N64 C137 1.333090
N64 C120 1.452160
N65 H273 1.012904
N65 C112 1.347958
N65 H274 1.005422
N66 C172 1.362707
N66 C140 1.449862
N66 H295 1.014622
C67 C70 1.543191
C67 H177 1.096256
C67 C68 1.526176
C68 H179 1.091346
C68 H178 1.090548
C68 C69 1.534148
C69 C72 1.537915
C69 H180 1.098115
C70 H181 1.091217
C70 H182 1.094623
C71 H183 1.103194
C71 C73 1.543144
C71 C74 1.524989
C73 C76 1.531548
C73 H185 1.091445
C73 H186 1.092476
C76 H189 1.092852
C76 H188 1.092313
C76 C81 1.536104
C77 H192 1.095868
C77 C87 1.545186
C77 C85 1.502476
C78 C83 1.539068
C78 H193 1.093762
C78 C79 1.533854
C80 C82 1.527141
C80 H194 1.093037
C80 C86 1.544042
C81 H195 1.096181
C81 H196 1.092200
C82 C84 1.541572
C82 H197 1.090340
C82 H198 1.090487
C83 H199 1.101670
C83 C91 1.526263
C84 H200 1.097587
C84 C92 1.535407
C85 C98 1.388618
C85 C99 1.389812
C86 H202 1.093193
C86 H201 1.092980
C88 C89 1.535417
C88 C96 1.534691
C88 C101 1.526064
C88 H206 1.096782
C89 H207 1.091899
C89 C90 1.536447
C89 H208 1.092248
C90 H211 1.092291
C90 C100 1.528849
C90 H210 1.091768
C91 H215 1.085445
C91 H213 1.088808
C91 H214 1.087565
C93 C103 1.539864
C93 H217 1.097683
C93 C104 1.540308
C94 C95 1.532274
C95 H218 1.094815
C95 C105 1.513754
C96 H219 1.092145
C96 H220 1.092932
C96 C109 1.524481
C98 H222 1.080212
C98 C106 1.380980
C99 C107 1.377184
C99 H223 1.080178
C100 H224 1.090943
C100 C108 1.528413
C100 H225 1.090243
C101 H227 1.088106
C101 H226 1.086377
C101 H228 1.086712
C102 C118 1.538904
C102 H230 1.095246
C102 C119 1.525787
C104 H232 1.094914
C104 H233 1.091728
C105 C125 1.389919
C105 C126 1.389237
C106 H235 1.078124
C106 C113 1.394150
C107 C113 1.393093
C107 H236 1.076394
C108 H237 1.094356
C108 H238 1.096454
C108 C133 1.492121
C109 H241 1.087463
C109 H239 1.088121
C109 H240 1.086513
C111 H242 1.095583
C111 C124 1.508059
C111 C122 1.556283
C114 C127 1.541261
C114 C116 1.538415
C114 H243 1.104355
C115 C128 1.503607
C115 H244 1.099237
C115 C117 1.558251
C116 C135 1.521666
C116 H246 1.098368
C119 H249 1.086596
C119 H251 1.086574
C119 H250 1.085409
C120 C129 1.533561
C120 H252 1.096672
C120 C130 1.537274
C121 C139 1.514259
C121 H253 1.094759
C121 C134 1.525294
C123 C132 1.548120
C123 H255 1.094835
C123 C138 1.507345
C124 C149 1.386581
C124 C150 1.389984
C125 C142 1.381115
C125 H257 1.079645
C126 C143 1.381787
C126 H258 1.078885
C128 C153 1.388527
C128 C154 1.388512
C129 C152 1.524935
C129 H260 1.099285
C131 H261 1.088631
C131 H262 1.090709
C131 C136 1.535249
C133 H264 1.082970
C133 C155 1.337221
C135 H267 1.086950
C135 H268 1.086111
C135 H269 1.086432
C136 H271 1.089378
C136 H270 1.089988
C136 C144 1.526871
C138 C158 1.387960
C138 C157 1.392237
C139 C160 1.388699
C139 C159 1.388022
C140 C141 1.528377
C140 C156 1.531747
C140 H272 1.099486
C142 H276 1.078115
C142 C151 1.393745
C143 C151 1.390249
C143 H277 1.079830
C144 H279 1.092185
C144 N145 1.476633
C144 H278 1.092377
N145 H146 1.150370
N145 H147 1.018272
N145 H148 1.040086
C149 H280 1.078425
C149 C162 1.384662
C150 H281 1.077756
C150 C161 1.381639
C152 H285 1.087722
C152 H284 1.086233
C152 H283 1.087934
C153 C163 1.381874
C153 H286 1.079129
C154 H287 1.080189
C154 C164 1.380303
C155 H288 1.080301
C155 C166 1.440008
C156 H290 1.091112
C156 H289 1.091199
C156 C176 1.547603
C157 H291 1.079899
C157 C168 1.380524
C158 C169 1.381030
C158 H292 1.078211
C159 C170 1.382881
C159 H293 1.078420
C160 C171 1.381380
C160 H294 1.078023
C161 C165 1.398041
C162 C165 1.395861
C163 C167 1.391709
C163 H297 1.079126
C164 H298 1.081537
C164 C167 1.390105
C166 H299 1.083407
C166 C175 1.343846
C168 C173 1.390730
C168 H300 1.078688
C169 H301 1.078662
C169 C173 1.389746
C170 C174 1.387756
C170 H302 1.079694
C171 H303 1.080868
C171 C174 1.385441
C172 C175 1.456153
C175 H304 1.079428

MOLECULAR INFO

Charge: 2
Spin polarization: 1
Multiplicity: 2

JOB |

Calculation Setup

Parameter Value
program call xtb xtbopt.xyz --ohess --charge +2 --uhf 1
coordinate file xtbopt.xyz
omp threads 1

xTB Model Parameters

Hamiltonian
Parameter Value
H0-scaling (s, p, d) 1.850000 2.230000 2.230000
zeta-weighting 0.500000
Dispersion
Parameter Value
s8 2.700000
a1 0.520000
a2 5.000000
s9 5.000000
Repulsion
Parameter Value
kExp 1.500000 1.000000
rExp 1.000000
Coulomb
Parameter Value
alpha 2.000000
third order shell-resolved
anisotropic true
a3 3.000000
a5 4.000000
cn-shift 1.200000
cn-exp 4.000000
max-rad 5.000000

Energy Breakdown

Energy Component Value Units
Total Energy -514.5986143309 Eh
SCC Energy -520.8179082259 Eh
Isotropic ES 1.1902175058 Eh
Anisotropic ES -0.0515848986 Eh
Anisotropic XC 0.1281892133 Eh
Dispersion -0.4388995327 Eh
Repulsion Energy 6.219293895 Eh
Additional Restraining 0 Eh
Property Value Units
Gradient Norm 0.0003493962 Eh/Bohr
HOMO-LUMO Gap 1.52517 eV

Orbital Energies

# Occupation Energy (eV)
1 2.0000 -32.1919

Multipole molecular moments

Dipole moment

Type X Y Z Total (D)
q only -1.802 -23.861 9.041 25.580
full -1.772 -26.133 8.875 70.294

Quadrupole moment (Traceless)

Type XX XY YY XZ YZ ZZ
q only -432.994 41.674 556.324 62.636 -131.396 -123.330
q+dip -420.587 39.459 557.644 86.074 -154.331 -137.056
full -422.120 40.836 561.224 83.534 -151.175 -139.104

Timings

Property Value Units
Wall time 2961.049 s
CPU time 2960.513 s
End time 2026-01-30T14:56:42.870


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